Bioinformatics
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Navigating the amino acid sequence space between functional proteins using a deep learning framework
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StrainFLAIR: Strain-level profiling of metagenomic samples using variation graphs
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Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets
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Locating ligand binding sites in G-protein coupled receptors using combined information from docking and sequence conservation
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SC-JNMF: Single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization
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A modelling framework for the prediction of the herd-level probability of infection from longitudinal data
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NGScloud2: optimized bioinformatic analysis using Amazon Web Services
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ToRQuEMaDA: Tool for Retrieving Queried Eubacteria, Metadata and Dereplicating Assemblies
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New alignment-based sequence extraction software (ALiBaSeq) and its utility for deep level phylogenetics
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ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses
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