Bioinformatics
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Network based multifactorial modelling of miRNA-target interactions
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In silico candidate variant and gene identification using inbred mouse strains
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BingleSeq: A user-friendly R package for Bulk and Single-cell RNA-Seq Data Analysis
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pmparser and PMDB: resources for large-scale, open studies of the biomedical literature
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Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics
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MACREL : antimicrobial peptide screening in genomes and metagenomes
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BiSCoT: Improving large eukaryotic genome assemblies with optical maps
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Bioshake: a Haskell EDSL for bioinformatics pipelines
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ProminTools: Shedding light on proteins of unknown function in biomineralization with user friendly tools illustrated using mollusc shell matrix protein sequences
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A flexible pipeline combining clustering and correction tools for prokaryotic and eukaryotic metabarcoding
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