Bioinformatics
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Iroki: automatic customization and visualization of phylogenetic trees
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fluff: exploratory analysis and visualization of high-throughput sequencing data
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Phylogenetic factorization of compositional data
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The Oyster River Protocol: A Multi Assembler and Kmer Approach For de novo Transcriptome Assembly
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Fast Virome Explorer: A Pipeline for Virus and Phage Identification and Abundance Profiling in Metagenomics Data
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Comparative analyses of toxin-associated gene homologs from an Old World viper, Daboia russelii
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BLAST-based validation of metagenomic sequence assignments
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FUSTr: a tool to find gene Families Under Selection in Transcriptomes
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A robust statistical framework for reconstructing genomes from metagenomic data
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Relative evolutionary rate inference in HyPhy with LEISR
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