Bioinformatics
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Comparison of de novo and reference genome-based transcriptome assembly pipelines for differential expression analysis of RNA sequencing data
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Targeted decontamination of sequencing data with CLEAN
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Bashing irreproducibility with shournal
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The necessity of considering enzymes as compartments in constraint-based genome-scale metabolic models
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MetaCerberus: distributed highly parallelized scalable HMM-based implementation for robust functional annotation across the tree of life
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Metaphor - A workflow for streamlined assembly and binning of metagenomes
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Hetnet connectivity search provides rapid insights into how two biomedical entities are related
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SODAR: managing multi-omics study data and metadata
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MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction
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Structure-based learning to model complex protein-DNA interactions and transcription-factor co-operativity in cis -regulatory elements
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