Bioinformatics
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svaRetro and svaNUMT: Modular packages for annotation of retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data
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T cell receptor convergence is an indicator of antigen-specific T cell response in cancer immunotherapies
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A novel in silico method employs chemical and protein similarity algorithms to accurately identify chemical transformations in the human gut microbiome
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Generative power of a protein language model trained on multiple sequence alignments
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Tourmaline: a containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake
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ProteInfer: deep networks for protein functional inference
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Lack of evidence for increased transcriptional noise in aged tissues
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Comprehensive phylogenetic analysis of the ribonucleotide reductase family reveals an ancestral clade and the role of insertions and extensions in diversification
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Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants
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Evaluation of in silico predictors on short nucleotide variants in HBA1, HBA2 and HBB associated with haemoglobinopathies
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