Bioinformatics
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ANNOgesic: A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes
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Clinker: visualising fusion genes detected in RNA-seq data
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SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution
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Clustering trees: a visualisation for evaluating clusterings at multiple resolutions
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Leveraging multiple transcriptome assembly methods for improved gene structure annotation
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Hot-starting software containers for bioinformatics analyses
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AMBER: Assessment of Metagenome BinnERs
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MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data
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YAMP: a containerised workflow enabling reproducibility in metagenomics research
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Experimenting with reproducibility in bioinformatics
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