Evaluated articles

A list by GigaScience

Articles that have been evaluated by GigaScience.

This list contains 442 articles Last updated Apr 28, 2026

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gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes

This article's authors
1. Muzaffer Arıkan
2. Thilo Muth
This article has 3 evaluations Latest evaluation on Jul 31, 2024 Published on Dec 5, 2023 Added on Jul 31, 2024
PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata

This article's authors
1. Nathan J. LeRoy
2. Oleksandr Khoroshevskyi
3. Aaron O’Brien
4. Rafał Stepień
5. Alip Arslan
6. Nathan C. Sheffield
This article has 3 evaluations Latest evaluation on Jul 31, 2024 Published on May 11, 2024 Added on Jul 31, 2024
Omada: Robust clustering of transcriptomes through multiple testing

This article's authors
1. Sokratis Kariotis
2. Tan Pei Fang
3. Haiping Lu
4. Chris Rhodes
5. Martin Wilkins
6. Allan Lawrie
7. Dennis Wang
This article has 6 evaluations Latest evaluation on Jul 31, 2024 Published on Dec 22, 2022 Added on Jul 31, 2024
Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi

This article's authors
1. Riccardo Baroncelli
2. José F. Cobo-Díaz
3. Tiziano Benocci
4. Mao Peng
5. Evy Battaglia
6. Sajeet Haridas
7. William Andreopoulos
8. Kurt LaButti
9. Jasmyn Pangilinan
10. Anna Lipzen
11. Maxim Koriabine
12. Diane Bauer
13. Gaetan Le Floch
14. Miia R. Mäkelä
15. Elodie Drula
16. Bernard Henrissat
17. Igor V. Grigoriev
18. Jo Anne Crouch
19. Ronald P. de Vries
20. Serenella A. Sukno
21. Michael R. Thon
This article has 2 evaluations Latest evaluation on Jul 1, 2024 Published on Sep 22, 2022 Added on Jul 1, 2024
Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: Evolutionary insights for horticultural innovation

This article's authors
1. Rafael Moysés Alves
2. Vinicius A. C. de Abreu
3. Rafaely Pantoja Oliveira
4. João Victor dos Anjos Almeida
5. Mauro de Medeiros de Oliveira
6. Saura R. Silva
7. Alexandre R. Paschoal
8. Sintia S. de Almeida
9. Pedro A. F. de Souza
10. Jesus A. Ferro
11. Vitor F. O. Miranda
12. Antonio Figueira
13. Douglas S. Domingues
14. Alessandro M. Varani
This article has 2 evaluations Latest evaluation on Jul 1, 2024 Published on Dec 23, 2023 Added on Jul 1, 2024
ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection

This article's authors
1. Justin Chu
2. Jiazhen Rong
3. Xiaowen Feng
4. Heng Li
This article has 2 evaluations Latest evaluation on Jul 1, 2024 Published on Nov 3, 2023 Added on Jul 1, 2024
Exploring polymorphic interspecies structural variants in Eucalyptus: Unravelling Their Role in Reproductive Isolation and Adaptive Divergence

This article's authors
1. Scott Ferguson
2. Ashley Jones
3. Kevin Murray
4. Rose L. Andrew
5. Helen Bothwell
6. Benjamin Schwessinger
7. Justin Borevitz
This article has 2 evaluations Latest evaluation on Jul 1, 2024 Published on Oct 21, 2023 Added on Jul 1, 2024
LRTK: A platform agnostic toolkit for linked-read analysis of both human genomes and metagenomes

This article's authors
1. Chao Yang
2. Zhenmiao Zhang
3. Yufen Huang
4. Xuefeng Xie
5. Herui Liao
6. Jin Xiao
7. Werner Pieter Veldsman
8. Kejing Yin
9. Xiaodong Fang
10. Lu Zhang
This article has 3 evaluations Latest evaluation on Jul 1, 2024 Published on Aug 21, 2023 Added on Jul 1, 2024
Hecatomb: An End-to-End Research Platform for Viral Metagenomics

This article's authors
1. Michael J. Roach
2. Sarah J. Beecroft
3. Kathie A. Mihindukulasuriya
4. Leran Wang
5. Anne Paredes
6. Kara Henry-Cocks
7. Lais Farias Oliveira Lima
8. Elizabeth A. Dinsdale
9. Robert A. Edwards
10. Scott A. Handley
This article has 2 evaluations Latest evaluation on Jul 1, 2024 Published on Oct 5, 2022 Added on Jul 1, 2024
IPEV: Identification of Prokaryotic and Eukaryotic Virus-derived sequences in virome using deep learning

This article's authors
1. Hengchuang Yin
2. Shufang Wu
3. Jie Tan
4. Qian Guo
5. Mo Li
6. Xiaoqing Jiang
7. Huaiqiu Zhu
This article has 2 evaluations Latest evaluation on May 13, 2024 Published on Jun 5, 2023 Added on May 13, 2024

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Evaluated articles

gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes

PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata

Omada: Robust clustering of transcriptomes through multiple testing

Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi

Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: Evolutionary insights for horticultural innovation

ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection

Exploring polymorphic interspecies structural variants in Eucalyptus: Unravelling Their Role in Reproductive Isolation and Adaptive Divergence

LRTK: A platform agnostic toolkit for linked-read analysis of both human genomes and metagenomes

Hecatomb: An End-to-End Research Platform for Viral Metagenomics

IPEV: Identification of Prokaryotic and Eukaryotic Virus-derived sequences in virome using deep learning