Covidex: an ultrafast and accurate tool for virus subtyping
Abstract
Covidex is an open-source, alignment-free machine learning subtyping tool for viral species. It is a shiny app that allows a fast and accurate classification in pre-defined clusters for SARS-CoV-2 and FMDV genome sequences. The user can also build its own classification models with the Covidex model generator.
Availability
Covidex is open-source, cross-platform compatible, and is available under the terms of the GNU General Public License v3 ( <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://www.gnu.org/licenses/gpl.txt">http://www.gnu.org/licenses/gpl.txt</ext-link> ). Covidex is available via SourceForge <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://sourceforge.net/projects/covidex">https://sourceforge.net/projects/covidex</ext-link> or the web application <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="https://cacciabue.shinyapps.io/shiny2/">https://cacciabue.shinyapps.io/shiny2/</ext-link>
Contact
<email>cacciabue.marco@inta.gob.ar</email> ; <email>marcocacciabue@yahoo.com</email>
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