The openretina Project: Collaborative Retina Modelling Across Datasets and Species

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Abstract

The retina provides a unique opportunity to develop a complete and precise model of a computational module in the central nervous system. Deep learning has recently vastly advanced efforts towards this goal, yet decades of data, code, and analysis practices remain fragmented between labs — limiting reproducibility, comparison, and cumulative progress. We argue that an open, collaborative modelling ecosystem is now essential to move the field from isolated studies toward a unified, quantitative account of retinal computation. To this end, we present <monospace>openretina</monospace> , a modular Python package built on PyTorch that provides a standardised framework for training, evaluating, and interpreting neural network models of the retina. The package implements a shared “Core + Readout” model architecture with a reproducible training pipeline, a common data format based on HDF5, unified evaluation metrics, and in silico analysis techniques from the literature. In its initial release, <monospace>openretina</monospace> integrates five publicly available datasets spanning various species and recording modalities. For each dataset, we provide curated preprocessing, standardised data loaders, and pre-trained model checkpoints that serve as reproducible baselines for benchmarking new approaches. We demonstrate the platform’s utility through example use cases: first, a gradient field analysis linking the instability of optimal stimuli to spatial contrast encoding in ON-OFF retinal ganglion cells; second, systematic benchmarking of architectures within and across datasets, revealing that substantial explainable variance remains uncaptured by current models. By making research tools interoperable across laboratories, <monospace>openretina</monospace> lays the groundwork for closing this gap collectively.

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