ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe

  1. Franc Janžekovič
  2. Elena Buzan
  3. Aja Bončina
  4. Nuria Escudero
  5. Rosa Fernández
  6. Astrid Böhne
  7. Rita Monteiro
  8. Laura Aguilera
  9. Marta Gut
  10. Francisco Câmara Ferreira
  11. Fernando Cruz
  12. Jèssica Gómez-Garrido
  13. Tyler Alioto
  14. Leanne Haggerty
  15. Fergal Martin
  16. Diego De Panis
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Abstract

The reference genome of Apodemus agrarius provides a valuable resource for phylogenetic studies of rodents, particularly mice, and for understanding factors that influence the geographical distribution of the species across East Asia and East Europe. A total of 25 contiguous chromosomal pseudomolecules were assembled from the genome sequence (23 autosomes and 2 sex chromosomes). This chromosome-level assembly encompasses 2.6 Gb, composed of 242 contigs and 60 scaffolds, with contig and scaffold N50 values of 35 Mb and 119 Mb, respectively.

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