Bioinformatics
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TopoMetry systematically learns and evaluates the latent geometry of single-cell data
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TissueFormer: Extending single-cell foundation models to predict population-level phenotypes
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Sample-level modeling of single-cell data at scale with tinydenseR
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Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2
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Calibrated analysis framework for nanopore direct RNA sequencing uncovers cell-specific m⁶A stoichiometry at conserved sites
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GEfetch2R : fetching single-cell/bulk RNA-seq data from public repositories to R and benchmarking the subsequent format conversion tools
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HVRLocator: A Computationally Efficient Tool for Identifying Hypervariable Regions in 16S rRNA Big Datasets
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Gene specificity landscapes for comparative transcriptomic analysis across tissues, cell types, and species
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MADRe: Strain-Level Metagenomic Classification Through Assembly-Driven Database Reduction
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scDenorm: a denormalisation tool for integrating single-cell transcriptomics data
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