Bioinformatics
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The necessity of considering enzymes as compartments in constraint-based genome-scale metabolic models
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MetaCerberus: distributed highly parallelized scalable HMM-based implementation for robust functional annotation across the tree of life
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Metaphor - A workflow for streamlined assembly and binning of metagenomes
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Hetnet connectivity search provides rapid insights into how two biomedical entities are related
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SODAR: managing multi-omics study data and metadata
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MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction
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Structure-based learning to model complex protein-DNA interactions and transcription-factor co-operativity incis-regulatory elements
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Similarity metric learning on perturbational datasets improves functional identification of perturbations
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The evolution of splice site sequence preference is linked to the U6 snRNA m6A methyltransferase METTL16
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Barcode-free multiplex plasmid sequencing using Bayesian analysis and nanopore sequencing
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