Bioinformatics
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Evaluating generalizability of artificial intelligence models for molecular datasets
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Genes in Humans and Mice: Insights from Deep learning of 777K Bulk Transcriptomes
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CELEBRIMBOR: Pangenomes from metagenomes
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Assessment of Gene Set Enrichment Analysis using curated RNA-seq-based benchmarks
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Spotless: a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics
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The diverse evolutionary histories of domesticated metaviral capsid genes in mammals
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Pseudo-spectral angle mapping for automated pixel-level analysis of highly multiplexed tissue image data
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AlphaFind: Discover structure similarity across the entire known proteome
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Genome-scale annotation of protein binding sites via language model and geometric deep learning
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Branching topology of the human embryo transcriptome revealed by entropy sort feature weighting
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