Bioinformatics
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Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data
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Assessing the ability of ChatGPT to extract natural product bioactivity and biosynthesis data from publications
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Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data
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RiboSnake – a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis
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TooManyCellsInteractive: a visualization tool for dynamic exploration of single-cell data
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Phyloformer: Fast, accurate and versatile phylogenetic reconstruction with deep neural networks
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Identifying images in the biology literature that are problematic for people with a color-vision deficiency
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MGPfactXMBD: A Model-Based Factorization Method for scRNA Data Unveils Bifurcating Transcriptional Modules Underlying Cell Fate Determination
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Pseudo-grading of tumor subpopulations from single-cell transcriptomic data using Phenotype Algebra
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ImmCellTyper: an integrated computational pipeline for systematic mining of Mass Cytometry data to assist deep immune profiling
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