Bioinformatics
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Insertions in the SARS-CoV-2 Spike N-Terminal Domain May Aid COVID-19 Transmission
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Constructing a multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and co-infecting microbes
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Modeling the trajectory of SARS-CoV-2 spike protein evolution in continuous latent space using a neural network and Gaussian process
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Pandemic-scale phylogenetics
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Omicron and Delta Variant of SARS-CoV-2: A Comparative Computational Study of Spike protein
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Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches
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T cell receptor repertoire signatures associated with COVID-19 severity
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Development of Web Application for the Comparison of Segment Variability with Sequence Evolution and Immunogenic Properties for Highly Variable Proteins: An Application to Viruses
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Investigating the human host - ssRNA virus interaction landscape using the SMEAGOL toolbox
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Variance in Variants: Propagating Genome Sequence Uncertainty into Phylogenetic Lineage Assignment
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